| Rank | Release
| Genre
| Budget
| Running Time
| Gross | Theaters | Total Gross | Release Date | Distributor
| Estimated
|
|---|
| 1 | Tears for You | - | - | - | $20,955,062 | 329 | $24,177,863 | Sep 30 | Toho | false |
| 2 | World Trade Center | - | - | - | $15,391,176 | 350 | $19,929,261 | Oct 7 | United International Pictures | false |
| 3 | Hula Girls | - | - | - | $6,697,774 | 181 | $8,791,660 | Sep 23 | Cine Quanon | false |
| 4 | The Lake House | - | - | - | $5,008,762 | 274 | $8,329,971 | Sep 23 | Warner Bros. | false |
| 5 | The Laws of Eternity | - | - | - | $4,182,660 | 120 | $4,182,660 | Sep 30 | Toei Company | false |
| 6 | The Black Dahlia | - | - | - | $3,912,386 | 256 | $4,829,692 | Oct 14 | Toho | false |
| 7 | Kisarazu Cats' Eye: Sayonara Game | - | - | - | $2,549,505 | 244 | $13,916,476 | Oct 28 | Asmik Ace Entertainment | false |
| 8 | Metro ni notte | - | - | - | $2,528,774 | 258 | $4,317,806 | Oct 21 | Shochiku | false |
| 9 | The Fast and the Furious: Tokyo Drift | - | - | - | $2,160,266 | 230 | $8,331,839 | Sep 16 | United International Pictures | false |
| 10 | Lady in the Water | - | - | - | $1,750,056 | 269 | $1,750,056 | Sep 30 | Warner Bros. | false |
| 11 | Flags of Our Fathers | - | - | - | $1,583,714 | 382 | $13,100,000 | Oct 28 | Warner Bros. | false |
| 12 | 16 Blocks | - | - | - | $1,564,427 | 162 | $1,564,427 | Oct 14 | Sony Pictures Releasing | false |
| 13 | X-Men: The Last Stand | - | - | - | $1,460,109 | 565 | $12,965,004 | Sep 9 | 20th Century Fox International | false |
| 14 | The Sentinel | - | - | - | $1,243,380 | 176 | $1,985,060 | Oct 7 | 20th Century Fox International | false |
| 15 | Sugar & Spice | - | - | - | $1,167,634 | 212 | $4,863,602 | Sep 16 | Toho | false |
| 16 | Tales from Earthsea | - | - | - | $1,079,253 | 435 | $730,830 | Jul 29 | Toho | false |
| 17 | Heavenly Forest | - | - | - | $983,542 | 237 | $5,311,676 | Oct 28 | Toei Company | false |
| 18 | Ultraman Mebius & Ultra Brothers | - | - | - | $550,739 | 154 | $3,612,844 | Sep 16 | Shochiku | false |
| 19 | The Angel's Egg | - | - | - | $362,843 | 113 | $362,843 | Oct 21 | Shochiku | false |
| 20 | Rainbow Song | - | - | - | $316,484 | 184 | $316,484 | Oct 28 | Toho | false |
| 21 | Snakes on a Plane | - | - | - | $311,068 | 100 | $311,068 | Oct 21 | Movie-Eye Entertainment | false |
| 22 | Welcome to Dongmakgol 2006 Re-release | - | - | - | $278,397 | 127 | $278,397 | Oct 28 | Nikkatsu | false |
