| Rank | Release | Total Gross | Top Rank | Overall Rank | Year | Distributor | 
|---|
| 201 | Isoroku Yamamoto, the Commander-in-Chief of the Combined Fleet | $17,969,314 | 2 | 588 | 2011 | Toei Company | 
| 202 | Fragments of the Last Will | $17,954,691 | 5 | 589 | 2022 | IMAX | 
| 203 | Mumon: The Land of Stealth | $17,952,505 | 2 | 590 | 2017 | Toho | 
| 204 | Hirugao: Love Affairs in the Afternoon | $17,896,717 | 2 | 592 | 2017 | Toho | 
| 205 | Real Steel | $17,887,068 | 3 | 593 | 2011 | Walt Disney Pictures | 
| 206 | Return to Never Land | $17,866,672 | 4 | 594 | 2002 | - | 
| 207 | Shield of Straw | $17,815,840 | 4 | 596 | 2013 | Warner Bros. | 
| 208 | Windstruck | $17,773,061 | 3 | 597 | 2004 | Warner Bros. | 
| 209 | 64: Part I | $17,756,875 | 3 | 598 | 2016 | Toho | 
| 210 | Captain Marvel | $17,752,989 | 2 | 599 | 2019 | Walt Disney Pictures | 
| 211 | Oba: The Last Samurai | $17,737,092 | 2 | 600 | 2011 | Toho | 
| 212 | The Promised Neverland | $17,671,537 | 3 | 602 | 2020 | Toho | 
| 213 | Shark Tale | $17,633,242 | 2 | 603 | 2005 | Asmik Ace Entertainment | 
| 214 | Crayon Shin-chan: Fast Asleep! Dreaming World Big Assault! | $17,574,905 | 2 | 606 | 2016 | Toho | 
| 215 | Crayon Shin-chan: Honeymoon Hurricane - The Lost Hiroshi | $17,533,468 | 3 | 607 | 2019 | Toho | 
| 216 | The Karate Kid | $17,432,585 | 3 | 610 | 2010 | Sony Pictures Releasing | 
| 217 | Summer Wars | $17,425,019 | 6 | 611 | 2009 | Warner Bros. | 
| 218 | Yo-kai Watch Shadowside: The Return of the Oni King | $17,330,669 | 2 | 613 | 2017 | Toho | 
| 219 | The Tale of Genji: A Thousand Year Enigma | $17,295,465 | 5 | 615 | 2011 | Toho | 
| 220 | Road to Ninja - Naruto the Movie | $17,278,965 | 3 | 616 | 2012 | Toho | 
| 221 | Tokyo Revengers 2: Bloody Halloween - Destiny | $17,216,567 | 2 | 618 | 2023 | Warner Bros. | 
| 222 | Crayon Shin-chan: Our Dinosaur Diary | $17,172,643 | 2 | 619 | 2024 | Toho | 
| 223 | Crayon Shin-Chan | $17,034,277 | 6 | 620 | 2014 | Toho | 
| 224 | Kong: Skull Island | $17,000,000 | 2 | 621 | 2017 | Warner Bros. | 
| 225 | Gintama: The Final | $16,971,401 | 2 | 625 | 2021 | Warner Bros. | 
| 226 | Kung Fu Panda | $16,953,252 | 5 | 627 | 2008 | Asmik Ace Entertainment | 
| 227 | Jumper | $16,939,118 | 2 | 628 | 2008 | 20th Century Fox International | 
| 228 | Aegis | $16,869,261 | 6 | 632 | 2005 | Shochiku | 
| 229 | Sadako 3D | $16,862,420 | 2 | 633 | 2012 | - | 
| 230 | Stolen Identity | $16,831,582 | 3 | 634 | 2018 | Toho | 
| 231 | Casino Royale | $16,816,091 | 2 | 635 | 2006 | Sony Pictures Releasing | 
| 232 | Paradise Kiss | $16,788,726 | 2 | 636 | 2011 | Warner Bros. | 
| 233 | King Arthur | $16,783,990 | 2 | 637 | 2004 | Buena Vista International | 
| 234 | 13 Assassins | $16,752,363 | 4 | 638 | 2010 | Toho | 
| 235 | Maiko haaaan!!! | $16,745,841 | 2 | 639 | 2007 | Toho | 
| 236 | Library Wars | $16,735,127 | 3 | 640 | 2013 | Toho | 
| 237 | Memories of Tomorrow | $16,731,669 | 2 | 641 | 2006 | Toei Company | 
| 238 | Tokyo Family | $16,713,198 | 3 | 642 | 2013 | Shochiku | 
| 239 | Tensou Sentai Goseiger: Epic on the Movie | $16,704,506 | 3 | 643 | 2010 | Toei Company | 
| 240 | Sex and the City | $16,692,762 | 3 | 644 | 2008 | Gaga | 
| 241 | Abacus and Sword | $16,575,961 | 4 | 646 | 2010 | Asmik Ace Entertainment | 
| 242 | Bolt | $16,537,605 | 4 | 647 | 2009 | Walt Disney Pictures | 
| 243 | Batman v Superman: Dawn of Justice | $16,531,874 | 2 | 648 | 2016 | Warner Bros. | 
| 244 | Trick the Movie: Last Stage | $16,518,606 | 2 | 649 | 2014 | Toho | 
| 245 | Kung Fu Hustle | $16,512,063 | 4 | 650 | 2005 | Sony Pictures Releasing | 
| 246 | Your Turn to Kill | $16,511,822 | 2 | 651 | 2021 | Toho | 
| 247 | Trick: The Movie 2 | $16,511,449 | 2 | 652 | 2006 | Toho | 
| 248 | The Great War of Archimedes | $16,454,674 | 3 | 654 | 2019 | Toho | 
| 249 | Star Reformer | $16,384,700 | 2 | 656 | 2006 | Toho | 
| 250 | Nin x Nin: Ninja Hattori-kun, the Movie | $16,351,134 | 2 | 657 | 2004 | Toho | 
| 251 | Norwegian Wood | $16,339,686 | 3 | 659 | 2010 | Toho-Towa | 
| 252 | Clash of the Titans | $16,337,196 | 4 | 660 | 2010 | Warner Bros. | 
| 253 | Alien vs. Predator | $16,178,746 | 5 | 665 | 2004 | 20th Century Fox International | 
| 254 | Ice Age | $16,125,417 | 3 | 666 | 2002 | - | 
| 255 | The Sum of All Fears | $16,076,216 | 3 | 670 | 2002 | - | 
| 256 | Dr. Coto's Clinic | $16,062,841 | 4 | 671 | 2022 | IMAX | 
| 257 | Cars 3 | $16,060,309 | 4 | 672 | 2017 | Walt Disney Pictures | 
| 258 | Pokémon the Movie: Secrets of the Jungle | $16,052,056 | 2 | 674 | 2020 | Toho | 
| 259 | Kamen Rider Movie War 2010: Kamen Rider vs. Kamen Rider W & Decade | $16,035,761 | 3 | 676 | 2009 | Toei Company | 
| 260 | Kurosagi: The Black Swindler | $16,012,002 | 4 | 677 | 2008 | Toho | 
| 261 | The Liar and His Lover | $15,935,668 | 5 | 678 | 2013 | Toho | 
| 262 | Pokémon the Movie: Volcanion and the Mechanical Marvel | $15,870,009 | 4 | 679 | 2016 | Toho | 
| 263 | Fueled: The Man They Called 'Pirate' | $15,827,405 | 5 | 681 | 2016 | Toho | 
| 264 | Eragon | $15,790,689 | 2 | 684 | 2006 | 20th Century Fox International | 
| 265 | The Great Yokai War | $15,787,492 | 4 | 685 | 2005 | Shochiku | 
| 266 | Gintama the Movie: The Final Chapter - Be Forever Yorozuya | $15,786,182 | 4 | 686 | 2013 | Warner Bros. | 
| 267 | Marie Antoinette | $15,735,433 | 2 | 687 | 2007 | Toho | 
| 268 | Oh-Oku: The Women of the Inner Palace | $15,688,239 | 2 | 689 | 2006 | Toei Company | 
| 269 | Suicide Squad | $15,607,713 | 2 | 690 | 2016 | Warner Bros. | 
| 270 | Utapri Movie 2, Uta No Prince-Sama Maji Love Starish Tours Movie | $15,569,229 | 3 | 692 | 2022 | Shochiku | 
| 271 | A Chorus of Angels | $15,568,034 | 2 | 693 | 2012 | Toei Company | 
| 272 | Teiichi: Battle of Supreme High | $15,545,390 | 4 | 694 | 2017 | Toho | 
| 273 | Kamen Rider × Super Sentai: Super Hero Taisen 2012 Re-release | $15,533,910 | 5 | 251 | 2012 | Toei Company | 
| 274 | Shin Kamen Rider | $15,489,306 | 2 | 695 | 2023 | Toei Company | 
| 275 | BTS: Yet to Come in Cinemas | $15,363,446 | 2 | 700 | 2023 | Avex Entertainment | 
| 276 | Edge of Tomorrow | $15,360,028 | 2 | 701 | 2014 | Warner Bros. | 
| 277 | Doraemon: Nobita and the Robot Kingdom | $15,330,458 | 3 | 702 | 2002 | - | 
| 278 | X2: X-Men United | $15,253,232 | 2 | 703 | 2003 | - | 
| 279 | The Bourne Ultimatum | $15,197,984 | 4 | 705 | 2007 | Toho-Towa | 
| 280 | The Fable | $15,183,043 | 2 | 706 | 2019 | Shochiku | 
| 281 | 366 Nichi | $15,143,217 | 2 | 708 | 2025 | Sony Pictures Releasing | 
| 282 | My Hero Academia: Heroes Rising | $15,104,115 | 3 | 711 | 2019 | Toho | 
| 283 | Recall | $15,101,476 | 2 | 712 | 2018 | Shochiku | 
| 284 | Hypnosismic -Division Rap Battle- Rule the Stage -Battle of Pride 2023 | $15,010,936 | 8 | 714 | - | - | 
| 285 | Stormy Night | $15,002,268 | 3 | 715 | 2005 | Toho | 
| 286 | Babel | $14,998,633 | 3 | 716 | 2007 | Gaga | 
| 287 | Fahrenheit 9/11 | $14,962,627 | 2 | 717 | 2004 | Gaga | 
| 288 | The Incite Mill | $14,950,926 | 3 | 718 | 2010 | Warner Bros. | 
| 289 | The Good Dinosaur | $14,923,467 | 5 | 719 | 2016 | Walt Disney Pictures | 
| 290 | Panic Room | $14,912,266 | 2 | 720 | 2002 | - | 
| 291 | Shin Jigen! Crayon Shin-chan the Movie | $14,844,923 | 4 | 721 | 2023 | IMAX | 
| 292 | The Village | $14,818,563 | 2 | 722 | 2004 | Buena Vista International | 
| 293 | One Piece: Dead End Adventure | $14,794,017 | 2 | 725 | 2003 | - | 
| 294 | Crayon Shin-chan: Burst Serving! Kung Fu Boys - Ramen Rebellion | $14,742,463 | 2 | 727 | 2018 | Toho | 
| 295 | Percy Jackson & the Olympians: The Lightning Thief | $14,725,558 | 2 | 728 | 2010 | 20th Century Fox International | 
| 296 | A Boy Called H | $14,673,839 | 8 | 730 | 2013 | Toho | 
| 297 | Black Panther | $14,655,352 | 2 | 731 | 2018 | Walt Disney Pictures | 
| 298 | Half a Confession | $14,638,660 | 3 | 732 | 2004 | - | 
| 299 | Crayon Shin-chan the Movie: Super Hot! The Spicy Kasukabe Dancers | $14,622,092 | 4 | 733 | 2025 | Toho | 
| 300 | Crayon Shin-chan: Mononoke Ninja Chinpuden | $14,609,977 | 2 | 735 | 2022 | IMAX | 
| 301 | The Devil Wears Prada | $14,598,937 | 2 | 736 | 2006 | 20th Century Fox International | 
| 302 | High & Low: The Movie | $14,590,783 | 2 | 737 | 2016 | Shochiku | 
| 303 | Tokyo Revengers 2: Bloody Halloween - Decisive Battle | $14,584,970 | 2 | 738 | 2023 | Warner Bros. | 
| 304 | The Glory of Team Batista | $14,584,818 | 2 | 739 | 2008 | Toho | 
| 305 | Robo-G | $14,583,603 | 2 | 740 | 2012 | Toho | 
| 306 | The Dark Knight | $14,574,849 | 2 | 729 | 2008 | Warner Bros. | 
| 307 | Pacific Rim | $14,503,917 | 5 | 741 | 2013 | Warner Bros. | 
| 308 | RRR | $14,503,399 | 7 | 742 | 2022 | Twin Film | 
| 309 | Nagasaki: Memories of My Son | $14,484,841 | 3 | 743 | 2015 | Shochiku | 
| 310 | Inferno | $14,456,437 | 3 | 744 | 2016 | Sony Pictures Releasing | 
| 311 | Battle Royale II: Requiem | $14,416,667 | 2 | 745 | 2003 | - | 
| 312 | Brother Bear | $14,409,556 | 4 | 746 | 2004 | - | 
| 313 | Murder on the Orient Express | $14,399,942 | 3 | 747 | 2017 | 20th Century Fox International | 
| 314 | Goemon | $14,374,689 | 3 | 749 | 2009 | Shochiku | 
| 315 | And So the Baton Is Passed | $14,368,469 | 2 | 750 | 2021 | Warner Bros. | 
| 316 | Mufasa: The Lion King | $14,299,364 | 2 | 751 | 2024 | Walt Disney Pictures | 
| 317 | Kureyon Shinchan: Arashi o yobu ougon no supai daisakusen | $14,295,582 | 3 | 752 | 2011 | Toho | 
| 318 | A Beautiful Mind | $14,286,836 | 3 | 753 | 2002 | - | 
| 319 | 1,778 Stories of Me and My Wife | $14,274,150 | 2 | 754 | 2011 | Toho | 
| 320 | RED | $14,239,761 | 2 | 755 | 2011 | Walt Disney Pictures | 
| 321 | Love Actually | $14,224,088 | 2 | 756 | 2004 | - | 
| 322 | Despicable Me | $14,196,443 | 2 | 757 | 2010 | Toho-Towa | 
| 323 | Black Showman | $14,187,402 | 5 | 758 | 2025 | Toho | 
| 324 | Inazuma Eleven GO the Movie: The Ultimate Bonds Gryphon 2011 Re-release | $14,180,109 | 3 | 244 | 2011 | Toho | 
| 325 | Godzilla Against Mechagodzilla | $14,122,958 | 3 | 760 | 2002 | Toho | 
| 326 | Shaolin Girl | $14,086,798 | 2 | 761 | 2008 | Toho | 
| 327 | Mission Impossible: Samurai | $14,086,665 | 2 | 762 | 2014 | Shochiku | 
| 328 | Jason Bourne | $14,078,193 | 2 | 763 | 2016 | Universal Pictures International (UPI) | 
| 329 | No More Cry | $14,074,814 | 3 | 764 | 2009 | Toho | 
| 330 | Rebirth | $14,066,908 | 4 | 765 | 2011 | Shochiku | 
| 331 | The Intern | $14,015,444 | 2 | 767 | 2015 | Warner Bros. | 
| 332 | The Eight Rangers | $14,013,405 | 6 | 768 | 2012 | Toho | 
| 333 | 10 Promises to My Dog | $13,946,504 | 4 | 769 | 2008 | Shochiku | 
| 334 | The Mummy | $13,903,158 | 2 | 771 | 2017 | Universal Pictures International (UPI) | 
| 335 | Monster | $13,878,706 | 3 | 772 | 2023 | IMAX | 
| 336 | Happy Flight | $13,809,609 | 2 | 773 | 2008 | Toho | 
| 337 | Crayon Shin-chan: Shrouded in Mystery! The Flowers of Tenkazu Academy | $13,760,388 | 2 | 774 | 2021 | Aniplex | 
| 338 | Puss in Boots | $13,758,233 | 4 | 775 | 2012 | Paramount Pictures International | 
| 339 | I Just Wanna Hug You | $13,651,173 | 2 | 778 | 2014 | Toho | 
| 340 | Chihayafuru Part III | $13,649,091 | 3 | 779 | 2018 | Toho | 
| 341 | Chronicle of My Mother | $13,557,108 | 6 | 782 | 2012 | Shochiku | 
| 342 | The Adventures of Tintin | $13,513,900 | 3 | 783 | 2011 | Toho-Towa | 
| 343 | The Meg | $13,500,000 | 3 | 785 | 2018 | Warner Bros. | 
| 344 | A Star Is Born | $13,500,000 | 4 | 784 | 2018 | Warner Bros. | 
| 345 | Tengoku de kimi ni aetara | $13,456,147 | 2 | 787 | 2007 | Toho | 
| 346 | One Piece: The Cursed Holy Sword | $13,422,333 | 3 | 788 | 2004 | - | 
| 347 | Umizaru | $13,361,623 | 3 | 789 | 2004 | Warner Bros. | 
| 348 | Rage | $13,329,893 | 4 | 791 | 2016 | Toho | 
| 349 | Kung Fu Panda 2 | $13,314,024 | 2 | 792 | 2011 | Paramount Pictures International | 
| 350 | Our Little Sister | $13,306,967 | 2 | 793 | 2015 | Toho | 
| 351 | Eagle Eye | $13,291,825 | 2 | 794 | 2008 | Herald Film Company | 
| 352 | One Missed Call | $13,285,943 | 3 | 795 | 2004 | - | 
| 353 | Helen the Baby Fox | $13,269,221 | 3 | 796 | 2006 | Shochiku | 
| 354 | My Tomorrow, Your Yesterday | $13,230,218 | 4 | 799 | 2016 | Toho | 
| 355 | Toei Spring Anime Fair | $13,107,237 | 3 | 803 | 2002 | - | 
| 356 | Crayon Shin-chan: Invasion!! Alien Shiriri | $13,101,686 | 3 | 805 | 2017 | Toho | 
| 357 | Flags of Our Fathers | $13,100,000 | 2 | 806 | 2006 | Warner Bros. | 
| 358 | Dangerous Cops: Final 5 Days | $13,074,758 | 2 | 807 | 2016 | Toei Company | 
| 359 | Shinso wo Ohanashi Shimasu | $13,047,346 | 3 | 809 | 2025 | Happinet Phantom Studios | 
| 360 | 300 | $13,036,817 | 2 | 810 | 2007 | Warner Bros. | 
| 361 | Animal Crossing | $12,915,432 | 3 | 815 | 2006 | Toho | 
| 362 | Total Recall | $12,887,141 | 3 | 816 | 2012 | Sony Pictures Releasing | 
| 363 | Kitaro and the Millennium Curse | $12,884,706 | 3 | 817 | 2008 | Shochiku | 
| 364 | Howling Village | $12,873,896 | 2 | 818 | 2020 | Toei Company | 
| 365 | Maleficent: Mistress of Evil | $12,846,413 | 2 | 819 | 2019 | Walt Disney Pictures | 
| 366 | Iron Man 2 | $12,831,962 | 2 | 821 | 2010 | United International Pictures | 
| 367 | Unstoppable | $12,807,068 | 2 | 822 | 2011 | 20th Century Fox International | 
| 368 | Fireworks | $12,805,503 | 2 | 823 | 2017 | Toho | 
| 369 | Legend of the Demon Cat | $12,795,759 | 2 | 824 | 2018 | Toho | 
| 370 | Noah | $12,764,481 | 2 | 825 | 2014 | Paramount Pictures International | 
| 371 | The Brain Man | $12,752,752 | 2 | 826 | 2013 | Toho | 
| 372 | Crayon Shinchan Super Dimension the Storm Called My Bride | $12,723,427 | 4 | 828 | 2010 | Toho | 
| 373 | Dawn of the Planet of the Apes | $12,718,083 | 2 | 829 | 2014 | 20th Century Fox International | 
| 374 | Robots | $12,679,972 | 4 | 831 | 2005 | 20th Century Fox International | 
| 375 | Humanoid Monster, Bem the Movie | $12,628,578 | 3 | 832 | 2012 | Toho | 
| 376 | Aibou X Day | $12,615,121 | 4 | 833 | 2013 | Toei Company | 
| 377 | Tokyo Tower | $12,605,532 | 3 | 353 | 2005 | Toho | 
| 378 | Kureyon Shin-chan 2013 Re-release | $12,572,797 | 2 | 157 | 2013 | Toho | 
| 379 | Character | $12,571,501 | 4 | 835 | 2021 | Toho | 
| 380 | Shrek the Third | $12,536,926 | 3 | 836 | 2007 | Asmik Ace Entertainment | 
| 381 | The Core | $12,500,000 | 2 | 837 | 2003 | - | 
| 382 | F1: The Movie | $12,475,996 | 2 | 838 | 2025 | Warner Bros. | 
| 383 | Kamen Rider Heisei Generations Forever | $12,465,928 | 6 | 839 | 2018 | Toei Company | 
| 384 | Kureyon Shin-chan 2007 Re-release | $12,465,599 | 2 | 157 | 2007 | Toho | 
| 385 | Crayon Shin-chan Movie 23: Ora No Hikkoshi Monogatari - Saboten Daisuugeki | $12,436,098 | 2 | 305 | 2006 | Toho | 
| 386 | The Bucket List | $12,420,911 | 2 | 840 | 2008 | Warner Bros. | 
| 387 | The Third Murder | $12,246,965 | 2 | 847 | 2017 | Toho | 
| 388 | Threads of Destiny | $12,244,937 | 4 | 848 | 2008 | Shochiku | 
| 389 | Son of the Mask | $12,218,089 | 5 | 851 | 2005 | Gaga | 
| 390 | Oppenheimer | $12,204,045 | 2 | 852 | 2024 | Universal Pictures International (UPI) | 
| 391 | Wonder Woman | $12,200,000 | 2 | 853 | 2017 | Warner Bros. | 
| 392 | I Am a Hero | $12,145,651 | 4 | 854 | 2016 | Toho | 
| 393 | Tomorrow's Joe | $12,124,367 | 3 | 855 | 2011 | Toho | 
| 394 | Muroi Shinji: Not Defeated | $12,121,760 | 2 | 856 | 2024 | Toho | 
| 395 | Valkyrie | $12,118,887 | 2 | 857 | 2009 | Toho-Towa | 
| 396 | Chihayafuru Part I | $12,116,649 | 4 | 858 | 2016 | Toho | 
| 397 | Happy Feet | $12,083,119 | 4 | 861 | 2007 | Warner Bros. | 
| 398 | Casshern | $12,070,880 | 3 | 862 | 2004 | - | 
| 399 | Fate/stay night [Heaven's Feel] II. lost butterfly | $12,057,492 | 3 | 863 | 2019 | Aniplex | 
| 400 | Sully | $12,031,043 | 2 | 864 | 2016 | Warner Bros. |